Have no worries, Microsoft has given us the exact tool for the situation.
IISApp.vbs lists all the applications, their PID and their App Pool name.
The script is already placed in systemroot\system32 on Windows Server 2003 so simply go to your Command Prompt and type in iisapp.vbs (the .vbs is optional) and you'll have an instant list of all the App Pool information you've always wanted to know.
You may need to type cscript iisapp.vbs instead if CScript isn't your default WSH script host.
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